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arangodb/arangod/Pregel
Jan 5165155ed1 Bug fix/fixes 0609 (#3227)
* do not use V8 variant of AQL functions in early optimization stage when a C++ variant is available

* additionally, simplify AQL function definitions and aliases

* warn when more than 90% of max mappings are in use

* added C++ variant of replication catchup

* added `--log.role` option

* updated CHANGELOG

* removed non-existing scheduler.threads option from config

* removed useless __FILE__, __LINE__ invocations

* updated CHANGELOG

* allow a priority V8 context

* remove TRI_CORE_MEM_ZONE

* try to fix Windows errors & warnings

* cleanup

* removed memory zones altogether

* exclude system collections from collection tests
2017-09-13 16:28:21 +02:00
..
Algos Allow pregel jobs to interrupt on shutdown (#2855) 2017-07-27 15:29:01 +02:00
examples
Aggregator.h
AggregatorHandler.cpp
AggregatorHandler.h
AlgoRegistry.cpp Little changes for SLPA support 2017-05-15 10:42:25 +02:00
AlgoRegistry.h
Algorithm.h Fixed SLPA 2017-05-17 11:50:24 +02:00
CommonFormats.h Various changes 2017-05-16 10:58:15 +02:00
Conductor.cpp Bug fix/adjust agency comm timeouts (#2765) 2017-07-13 00:44:28 +02:00
Conductor.h added pregel vertex / edge count checks 2017-06-07 17:18:59 +02:00
Graph.h Pregel improvements 2017-05-22 11:10:28 +02:00
GraphFormat.h Fixed SLPA 2017-05-17 11:50:24 +02:00
GraphSerializer.h
GraphStore.cpp No access collections Improvements (#3190) 2017-09-07 14:55:07 +02:00
GraphStore.h Allow pregel jobs to interrupt on shutdown (#2855) 2017-07-27 15:29:01 +02:00
IncomingCache.cpp
IncomingCache.h
Iterators.h
MasterContext.h DMID improvements 2017-05-18 23:27:54 +02:00
MessageCombiner.h
MessageFormat.h
OutgoingCache.cpp Bug fix/adjust agency comm timeouts (#2765) 2017-07-13 00:44:28 +02:00
OutgoingCache.h
PregelFeature.cpp Bug fix/issues 1806 (#3069) 2017-08-18 22:58:09 +02:00
PregelFeature.h
README.md Feature/auth context (#2704) 2017-07-02 23:15:57 +02:00
Recovery.cpp
Recovery.h
Statistics.h added pregel vertex / edge count checks 2017-06-07 17:18:59 +02:00
TypedBuffer.h
Utils.cpp Bug fix/fixes 0609 (#3227) 2017-09-13 16:28:21 +02:00
Utils.h
VertexComputation.h Pregel improvements 2017-05-22 11:10:28 +02:00
Worker.cpp Allow pregel jobs to interrupt on shutdown (#2855) 2017-07-27 15:29:01 +02:00
Worker.h
WorkerConfig.cpp
WorkerConfig.h
WorkerContext.h

README.md

ArangoDB-Logo

Pregel Subsystem

The pregel subsystem implements a variety of different grapg algorithms, this readme is more intended for internal use.

Protocol

Message format between DBServers:

{sender:"someid", executionNumber:1337, globalSuperstep:123, messages: [, , vertexID2, ] } Any type of slice is supported

Useful Commands

Import graph e.g. https://github.com/arangodb/example-datasets/tree/master/Graphs/1000 First rename the columns '_key', '_from', '_to' arangoimp will keep those.

In arangosh:

db._create('vertices', {numberOfShards: 2});
db._createEdgeCollection('alt_edges');
db._createEdgeCollection('edges', {numberOfShards: 2, shardKeys:["_vertex"], distributeShardsLike:'vertices'});

arangoimp --file generated_vertices.csv --type csv --collection vertices --overwrite true --server.endpoint http+tcp://127.0.0.1:8530

Or: for(var i=0; i < 5000; i++) db.vertices.save({_key:i+""});

arangoimp --file generated_edges.csv --type csv --collection alt_edges --overwrite true --from-collection-prefix "vertices" --to-collection-prefix "vertices" --convert false --server.endpoint http+tcp://127.0.0.1:8530

AQL script to copy edge collection into one with '_vertex':

FOR doc IN alt_edges INSERT {_vertex:SUBSTRING(doc._from,FIND_FIRST(doc._from,"/")+1), _from:doc._from, _to:doc._to} IN edges LET values = ( FOR s IN vertices RETURN s.result ) RETURN SUM(values)

AWK Scripts

Make CSV file with IDs unique cat edges.csv | tr '[:space:]' '[\n*]' | grep -v "^\s*$" | awk '!seen[$0]++' > vertices.csv

Make CSV file with arango compatible edges

cat edges.csv | awk -F" " '{print "profiles/" $1 "\tprofiles/" $2 "\t" $1}' >> arango-edges.csv

arangoimp --file vertices.csv --type csv --collection twitter_v --overwrite true --convert false --server.endpoint http+tcp://127.0.0.1:8530 -c none arangoimp --file arango-edges.csv --type csv --collection twitter_e --overwrite true --convert false --separator "\t" --server.endpoint http+tcp://127.0.0.1:8530 -c none